Research workbench
Structure of AMUC_1100 without transmembrane region from akkermansia muciniphila
Analyse Structure of AMUC_1100 without transmembrane region from akkermansia muciniphila in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6KNY
- Type
- protein
- Length
- 363 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Protein AMUC_1100
- UniProt
- B2UR41
- Pockets
- 2 · best druggability 0.55
Structure
x-ray diffraction · 2 distinct chains · 44% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Protein AMUC_1100 | protein | 173 | 42% helix, 24% strand | B2UR41 |
| B | Protein AMUC_1100 | protein | 190 | 45% helix, 23% strand | B2UR41 |
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 241 | 0.55 | 0.77 | 22 | empty |
| 2 | 177 | 0.54 | 0.79 | 27 | empty |
Interfaces
1 interface between chains.
- A–B · 1023 Ų buried · 16 hydrogen bonds · protein-protein
Compared structures
- 6KNY · Structure of Amuc_1100 without transmembrane region from Akkermansia muciniphila · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B2UR41
- Elsewhere: RCSB PDB 6KNY · PDBe 6KNY · UniProt B2UR41
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