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Crystal structure of a novel esterase cinb from enterobacter asburiae

Analyse Crystal structure of a novel esterase cinb from enterobacter asburiae in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6KMO
Type: protein
Length: 658 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: ALPHA/BETA hydrolase
UniProt: A0A1D3AXI2
Pockets: 6 · best druggability 0.72

Structure

x-ray diffraction · 2 distinct chains · 44% helix, 20% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	ALPHA/BETA hydrolase	protein	330	44% helix, 21% strand	A0A1D3AXI2
B	ALPHA/BETA hydrolase	protein	328	44% helix, 20% strand	A0A1D3AXI2

Pockets

6 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	70	0.72	0.96	22	empty
2	213	0.62	0.82	38	empty
3	178	0.49	0.77	25	empty
4	168	0.47	0.76	29	empty
5	155	0.45	0.75	23	empty

Interfaces

1 interface between chains.

A–B · 2490 Å² buried · 41 hydrogen bonds · protein-protein

Compared structures

6KMO · Crystal structure of a novel esterase CinB from Enterobacter asburiae · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A1D3AXI2
Elsewhere: RCSB PDB 6KMO · PDBe 6KMO · UniProt A0A1D3AXI2

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