Research workbench
Complex structure of PEX13P SH3 domain with a peptide of PEX14P
Analyse Complex structure of PEX13P SH3 domain with a peptide of PEX14P in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1N5Z
- Type
- protein
- Length
- 160 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Peroxisomal membrane protein PAS20; 14-mer peptide from peroxisomal membrane protein PEX14
- UniProt
- P80667, P53112
Structure
x-ray diffraction · 3 distinct chains · 6% helix, 44% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Peroxisomal membrane protein PAS20 | protein | 71 | 8% helix, 48% strand | P80667 |
| P, Q | 14-mer peptide from peroxisomal membrane protein PEX14 | protein | 10 | 0% helix, 0% strand | P53112 |
| B | Peroxisomal membrane protein PAS20 | protein | 69 | 4% helix, 46% strand | P80667 |
Interfaces
3 interfaces between chains.
- B–Q · 542 Ų buried · 10 hydrogen bonds · protein-protein
- A–P · 533 Ų buried · 7 hydrogen bonds · protein-protein
- A–B · 43 Ų buried · 1 hydrogen bond · protein-protein
Compared structures
- 1N5Z · Complex structure of Pex13p SH3 domain with a peptide of Pex14p · the same entry in another collection · chain A against A, TM-score 1.00
- P80667 · AlphaFold monomer V2.0 prediction for peroxisomal membrane protein PAS20 (P80667) · a predicted model of the same protein · chain A against A, TM-score 0.96
- P53112 · AlphaFold monomer V2.0 prediction for peroxisomal membrane protein PEX14 (P53112) · a predicted model of the same protein · chain P against A, TM-score 0.48
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P80667
- Every structure of UniProt P53112
- Elsewhere: RCSB PDB 1N5Z · PDBe 1N5Z · UniProt P80667 · UniProt P53112
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