Research workbench
Structure of ovalbumin from emu (dromaius novaehollandiae)
Analyse Structure of ovalbumin from emu (dromaius novaehollandiae) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6KGA
- Type
- protein
- Length
- 1,161 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ovalbumin
- UniProt
- E2RVI8
- Pockets
- 8 · best druggability 0.75
Structure
x-ray diffraction · 1 distinct chain · 29% helix, 34% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C | Ovalbumin | protein | 387 | 29% helix, 34% strand | E2RVI8 |
Pockets
8 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 937 | 0.75 | 0.78 | 76 | empty |
| 2 | 961 | 0.75 | 0.78 | 90 | empty |
| 3 | 812 | 0.75 | 0.79 | 79 | empty |
| 4 | 125 | 0.40 | 0.75 | 23 | empty |
| 5 | 109 | 0.35 | 0.73 | 26 | empty |
Interfaces
3 interfaces between chains.
- A–B · 3028 Ų buried · 50 hydrogen bonds · protein-protein
- B–C · 3014 Ų buried · 51 hydrogen bonds · protein-protein
- A–C · 2706 Ų buried · 40 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 3 disulfide (disulfide).
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt E2RVI8
- Elsewhere: RCSB PDB 6KGA · PDBe 6KGA · UniProt E2RVI8
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