Research workbench
Crystal structure of FPGLU1 from fervidobacterium pennivoraus
Analyse Crystal structure of FPGLU1 from fervidobacterium pennivoraus in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6KDC
- Type
- protein
- Length
- 465 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Beta-GLUCOSIDASE/6-phospho-beta-GLUCOSIDASE/BETA- galactosidase
- UniProt
- H9UEF1
- Ligands
- CO
- Pockets
- 2 · best druggability 0.75
Structure
x-ray diffraction · 1 distinct chain · 40% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Beta-GLUCOSIDASE/6-phospho-beta-GLUCOSIDASE/BETA- galactosidase | protein | 465 | 40% helix, 17% strand | H9UEF1 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 500 | 0.75 | 0.83 | 44 | GOL |
| 2 | 62 | 0.35 | 0.78 | 16 | empty |
Compared structures
- 6KDC · crystal structure of Fpglu1 from fervidobacterium pennivoraus · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt H9UEF1
- Elsewhere: RCSB PDB 6KDC · PDBe 6KDC · UniProt H9UEF1
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