Research workbench
Crystal structure of yedk with ssdna containing an abasic site
Analyse Crystal structure of yedk with ssdna containing an abasic site in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6KCQ
- Type
- protein + DNA
- Length
- 227 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Sos response-associated protein; DNA (5'-D(P*AP*AP*AP*(PED)P*AP*A)-3')
- EC
- 3.4.-.-
- UniProt
- A0A2S5ZH06
Structure
x-ray diffraction · 2 distinct chains · 24% helix, 36% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| B | Sos response-associated protein (EC 3.4.-.-) | protein | 221 | 24% helix, 36% strand | A0A2S5ZH06 |
| A | DNA (5'-D(P*AP*AP*AP*(PED)P*AP*A)-3') | dna | 6 | — | — |
Interfaces
1 interface between chains.
- B–A · 860 Ų buried · 15 hydrogen bonds · protein-nucleic
Modifications
Observed in the structure: 1 modified (nucleotide modification).
Compared structures
- 6KCQ · Crystal structure of yedK with ssDNA containing an abasic site · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A2S5ZH06
- Elsewhere: RCSB PDB 6KCQ · PDBe 6KCQ · UniProt A0A2S5ZH06
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