Research workbench
Crystal structure of yedk in complex with ssdna containing abasic site
Analyse Crystal structure of yedk in complex with ssdna containing abasic site in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6KBX
- Type
- protein + DNA
- Length
- 231 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Sos response-associated protein; DNA 5'-D (*CP*GP*GP*TP* (PED)P*GP*AP*TP*TP*C)-3'
- EC
- 3.4.-.-
- UniProt
- A0A2S5ZH06
Structure
x-ray diffraction · 2 distinct chains · 26% helix, 35% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| B | Sos response-associated protein (EC 3.4.-.-) | protein | 226 | 26% helix, 35% strand | A0A2S5ZH06 |
| A | DNA 5'-D (*CP*GP*GP*TP* (PED)P*GP*AP*TP*TP*C)-3' | dna | 5 | — | — |
Interfaces
1 interface between chains.
- B–A · 607 Ų buried · 10 hydrogen bonds · protein-nucleic
Modifications
Observed in the structure: 1 modified (nucleotide modification).
Compared structures
- 6KBX · Crystal structure of yedK in complex with ssDNA containing abasic site · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A2S5ZH06
- Elsewhere: RCSB PDB 6KBX · PDBe 6KBX · UniProt A0A2S5ZH06
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