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Crystal structure of the type III effector xopai from xanthomonas axonopodis pv. citri in space group P41212
Analyse Crystal structure of the type III effector xopai from xanthomonas axonopodis… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6K93
- Type
- protein
- Length
- 239 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Type III effector xopai
- UniProt
- Q8PHM1
- Pockets
- 2 · best druggability 0.56
Structure
x-ray diffraction · 1 distinct chain · 41% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Type III effector xopai | protein | 239 | 41% helix, 19% strand | Q8PHM1 |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 319 | 0.56 | 0.76 | 28 | empty |
| 2 | 105 | 0.41 | 0.77 | 21 | empty |
Compared structures
- 6K93 · Crystal structure of the type III effector XopAI from Xanthomonas axonopodis pv. citri in… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8PHM1
- Elsewhere: RCSB PDB 6K93 · PDBe 6K93 · UniProt Q8PHM1
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