Research workbench
Crystal structure of mbpapo-TIM21 fusion protein with a 17-residue helical linker
Analyse Crystal structure of mbpapo-TIM21 fusion protein with a 17-residue helical… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6K7E
- Type
- protein
- Length
- 498 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- MALTOSE/MALTODEXTRIN-binding periplasmic protein, mitochondrial import inner membrane…
- UniProt
- P0AEX9, P53220
- Pockets
- 4 · best druggability 0.63
Structure
x-ray diffraction · 1 distinct chain · 41% helix, 25% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | MALTOSE/MALTODEXTRIN-binding periplasmic protein, mitochondrial import inner membrane translocase subunit TIM21 | protein | 498 | 41% helix, 25% strand | P0AEX9, P53220 |
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 489 | 0.63 | 0.76 | 47 | empty |
| 2 | 272 | 0.57 | 0.77 | 35 | empty |
| 3 | 101 | 0.39 | 0.75 | 17 | empty |
| 4 | 61 | 0.32 | 0.76 | 18 | empty |
Compared structures
- 6K7E · Crystal structure of MBPapo-Tim21 fusion protein with a 17-residue helical linker · the same entry in another collection · chain A against A, TM-score 1.00
- P53220 · AlphaFold monomer V2.0 prediction for mitochondrial import inner membrane translocase… · a predicted model of the same protein · chain A against A, TM-score 0.24
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0AEX9
- Every structure of UniProt P53220
- Elsewhere: RCSB PDB 6K7E · PDBe 6K7E · UniProt P0AEX9 · UniProt P53220
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