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Crystal structure of the DNA-binding domain of gapr

Analyse Crystal structure of the DNA-binding domain of gapr in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6K5X
Type: protein
Length: 65 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: UPF0335 protein CCNA_03428
UniProt: B8H4R9
Ligands: SO4

Structure

x-ray diffraction · 1 distinct chain · 82% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	UPF0335 protein CCNA_03428	protein	65	82% helix, 0% strand	B8H4R9

Ligands and binding sites

SO4 · Sulfate ion · ion · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

6K5X · Crystal Structure of the DNA-Binding Domain of GapR · the same entry in another collection · chain A against A, TM-score 1.00
B8H4R9 · AlphaFold monomer V2.0 prediction for UPF0335 protein CCNA_03428 (B8H4R9) · a predicted model of the same protein · chain A against A, TM-score 0.83

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt B8H4R9
Elsewhere: RCSB PDB 6K5X · PDBe 6K5X · UniProt B8H4R9

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