Research workbench
Ancestral luciferase anclamp in complex with dlsa
Analyse Ancestral luciferase anclamp in complex with dlsa in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6K4C
- Type
- protein
- Length
- 538 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ancestral luciferase anclamp
- Ligands
- SLU, MG
- Pockets
- 5 · best druggability 0.79
Structure
x-ray diffraction · 1 distinct chain · 32% helix, 26% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ancestral luciferase anclamp | protein | 538 | 32% helix, 26% strand | — |
Ligands and binding sites
- SLU · 5'-O-[N-(dehydroluciferyl)-sulfamoyl] adenosine · ligand · chains A
- MG · Magnesium ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
5 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 856 | 0.79 | 0.82 | 95 | SLU, MG |
| 2 | 338 | 0.60 | 0.77 | 37 | empty |
| 3 | 123 | 0.48 | 0.79 | 17 | empty |
| 4 | 114 | 0.39 | 0.75 | 22 | empty |
| 5 | 54 | 0.28 | 0.74 | 12 | empty |
Compared structures
- 6K4C · Ancestral luciferase AncLamp in complex with DLSA · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6K4C · PDBe 6K4C
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