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Crystal structure of LPG2147-LPG2149 complex

Analyse Crystal structure of LPG2147-LPG2149 complex in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6K3B
Type: protein
Length: 481 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: LPG2147; Uncharacterized protein
UniProt: A0A2S6F4I5, A0A2S6EWM8
Pockets: 5 · best druggability 0.65

Structure

x-ray diffraction · 2 distinct chains · 53% helix, 11% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	LPG2147	protein	375	50% helix, 15% strand	A0A2S6F4I5
B	Uncharacterized protein	protein	106	66% helix, 0% strand	A0A2S6EWM8

Pockets

5 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	362	0.65	0.79	43	empty
2	74	0.38	0.77	13	empty
3	54	0.33	0.77	13	empty
4	60	0.29	0.74	11	empty
5	61	0.29	0.74	18	empty

Interfaces

1 interface between chains.

A–B · 1169 Å² buried · 18 hydrogen bonds · protein-protein

Compared structures

6K3B · Crystal structure of Lpg2147-Lpg2149 complex · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A2S6F4I5
Every structure of UniProt A0A2S6EWM8
Elsewhere: RCSB PDB 6K3B · PDBe 6K3B · UniProt A0A2S6F4I5 · UniProt A0A2S6EWM8

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