Research workbench
Crystal structure of rhodothermus marinus substrate-binding protein at pH 5.5
Analyse Crystal structure of rhodothermus marinus substrate-binding protein at pH 5.5 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6K1W
- Type
- protein
- Length
- 149 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- ABC-type uncharacterized transport system periplasmic component-like protein
- UniProt
- D0MDR1
- Pockets
- 1 · best druggability 0.32
Structure
x-ray diffraction · 1 distinct chain · 48% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | ABC-type uncharacterized transport system periplasmic component-like protein | protein | 149 | 48% helix, 18% strand | D0MDR1 |
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 70 | 0.32 | 0.75 | 21 | empty |
Compared structures
- 6K1W · Crystal structure of Rhodothermus marinus substrate-binding protein at pH 5.5 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt D0MDR1
- Elsewhere: RCSB PDB 6K1W · PDBe 6K1W · UniProt D0MDR1
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