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Crystal structure of sesquisabinene B synthase 1 from santalum album

Analyse Crystal structure of sesquisabinene B synthase 1 from santalum album in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6K16
Type: protein
Length: 506 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Sesquisabinene B synthase 1
UniProt: A0A0A0RDR2
Ligands: MG
Pockets: 6 · best druggability 0.72

Structure

x-ray diffraction · 1 distinct chain · 76% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Sesquisabinene B synthase 1	protein	506	76% helix, 0% strand	A0A0A0RDR2

Ligands and binding sites

MG · Magnesium ion · metal · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

6 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	233	0.72	0.87	28	empty
2	383	0.70	0.82	47	MG
3	307	0.70	0.84	39	empty
4	218	0.55	0.78	21	empty
5	60	0.38	0.79	16	empty

Compared structures

6K16 · Crystal Structure of Sesquisabinene B Synthase 1 from Santalum album · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A0A0RDR2
Elsewhere: RCSB PDB 6K16 · PDBe 6K16 · UniProt A0A0A0RDR2

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