Research workbench
Crystal structure of mvca from legionella pneumophila
Analyse Crystal structure of mvca from legionella pneumophila in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6K11
- Type
- protein
- Length
- 762 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- LPG2148(MVCA)
- UniProt
- Q5ZTL3
- Pockets
- 7 · best druggability 0.61
Structure
x-ray diffraction · 2 distinct chains · 51% helix, 14% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | LPG2148(MVCA) | protein | 381 | 51% helix, 14% strand | Q5ZTL3 |
| B | LPG2148(MVCA) | protein | 381 | 51% helix, 14% strand | Q5ZTL3 |
Pockets
7 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 305 | 0.61 | 0.79 | 37 | empty |
| 2 | 259 | 0.60 | 0.79 | 31 | empty |
| 3 | 329 | 0.55 | 0.75 | 34 | empty |
| 4 | 63 | 0.32 | 0.76 | 13 | empty |
| 5 | 69 | 0.32 | 0.75 | 13 | empty |
Interfaces
1 interface between chains.
- A–B · 528 Ų buried · 13 hydrogen bonds · protein-protein
Compared structures
- 6K11 · Crystal structure of MvcA from Legionella pneumophila · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5ZTL3
- Elsewhere: RCSB PDB 6K11 · PDBe 6K11 · UniProt Q5ZTL3
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