Research workbench
Structure of the bacterial flagellar hook from salmonella typhimurium
Analyse Structure of the bacterial flagellar hook from salmonella typhimurium in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6JZT
- Type
- protein
- Length
- 8,844 residues
- Chains
- 22
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Flagellar hook protein flge
- UniProt
- A0A0J1A5C1
- Pockets
- 20 · best druggability 0.88
Structure
electron microscopy · 1 distinct chain · 15% helix, 35% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, E, F, G, H, I, J, K, a, b, c, d, e, f, g, h, i, j, k | Flagellar hook protein flge | protein | 402 | 15% helix, 35% strand | A0A0J1A5C1 |
Pockets
20 pockets found on a 1 Å grid, 20 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1128 | 0.88 | 0.89 | 144 | empty |
| 2 | 807 | 0.88 | 0.91 | 126 | empty |
| 3 | 1015 | 0.88 | 0.89 | 117 | empty |
| 4 | 1099 | 0.88 | 0.89 | 131 | empty |
| 5 | 1153 | 0.88 | 0.89 | 148 | empty |
Interfaces
44 interfaces between chains.
- c–h · 1475 Ų buried · 12 hydrogen bonds · protein-protein
- d–i · 1475 Ų buried · 12 hydrogen bonds · protein-protein
- F–K · 1474 Ų buried · 12 hydrogen bonds · protein-protein
- b–g · 1474 Ų buried · 12 hydrogen bonds · protein-protein
- C–H · 1473 Ų buried · 12 hydrogen bonds · protein-protein
Compared structures
- 6JZT · Structure of the bacterial flagellar hook from Salmonella typhimurium · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0J1A5C1
- Elsewhere: RCSB PDB 6JZT · PDBe 6JZT · UniProt A0A0J1A5C1
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