Research workbench
Structure of the bacterial flagellar polyrod
Analyse Structure of the bacterial flagellar polyrod in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6JZR
- Type
- protein
- Length
- 5,434 residues
- Chains
- 22
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Flagellar basal-body rod protein flgg
- UniProt
- A0A0J5DTL8
- Pockets
- 20 · best druggability 0.90
Structure
electron microscopy · 1 distinct chain · 24% helix, 26% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, E, F, G, H, I, J, K, a, b, c, d, e, f, g, h, i, j, k | Flagellar basal-body rod protein flgg | protein | 247 | 24% helix, 26% strand | A0A0J5DTL8 |
Pockets
20 pockets found on a 1 Å grid, 20 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 981 | 0.90 | 0.92 | 130 | empty |
| 2 | 1101 | 0.90 | 0.92 | 149 | empty |
| 3 | 1084 | 0.89 | 0.90 | 132 | empty |
| 4 | 497 | 0.87 | 0.93 | 78 | empty |
| 5 | 431 | 0.87 | 0.94 | 65 | empty |
Interfaces
83 interfaces between chains.
- J–d · 2229 Ų buried · 33 hydrogen bonds · protein-protein
- d–i · 2225 Ų buried · 33 hydrogen bonds · protein-protein
- A–F · 2224 Ų buried · 33 hydrogen bonds · protein-protein
- I–c · 2223 Ų buried · 33 hydrogen bonds · protein-protein
- F–K · 2222 Ų buried · 33 hydrogen bonds · protein-protein
Compared structures
- 6JZR · Structure of the bacterial flagellar polyrod · the same entry in another collection · chain C against C, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0J5DTL8
- Elsewhere: RCSB PDB 6JZR · PDBe 6JZR · UniProt A0A0J5DTL8
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