Research workbench
S-formylglutathione hydrolase homolog from a psychrophilic bacterium of shewanella frigidimarina
Analyse S-formylglutathione hydrolase homolog from a psychrophilic bacterium of… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6JZL
- Type
- protein
- Length
- 554 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- S-formylglutathione hydrolase
- EC
- 3.1.2.12
- UniProt
- Q07XK4
- Pockets
- 2 · best druggability 0.66
Structure
x-ray diffraction · 2 distinct chains · 39% helix, 25% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | S-formylglutathione hydrolase (EC 3.1.2.12) | protein | 276 | 40% helix, 25% strand | Q07XK4 |
| B | S-formylglutathione hydrolase (EC 3.1.2.12) | protein | 278 | 38% helix, 25% strand | Q07XK4 |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 341 | 0.66 | 0.81 | 61 | empty |
| 2 | 87 | 0.34 | 0.74 | 18 | empty |
Interfaces
1 interface between chains.
- A–B · 908 Ų buried · 10 hydrogen bonds · protein-protein
Compared structures
- 6JZL · S-formylglutathione hydrolase homolog from a psychrophilic bacterium of Shewanella… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q07XK4
- Elsewhere: RCSB PDB 6JZL · PDBe 6JZL · UniProt Q07XK4
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