Research workbench
Structure of fima type-2 (FIMA2) prepilin of the type V major fimbrium
Analyse Structure of fima type-2 (FIMA2) prepilin of the type V major fimbrium in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6JZJ
- Type
- protein
- Length
- 345 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Major fimbrium subunit fima type-2
- UniProt
- Q4W6Y8
- Ligands
- SO4
- Pockets
- 1 · best druggability 0.26
Structure
x-ray diffraction · 1 distinct chain · 8% helix, 44% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Major fimbrium subunit fima type-2 | protein | 345 | 8% helix, 44% strand | Q4W6Y8 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 55 | 0.26 | 0.73 | 19 | empty |
Compared structures
- 6JZJ · Structure of FimA type-2 (FimA2) prepilin of the type V major fimbrium · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q4W6Y8
- Elsewhere: RCSB PDB 6JZJ · PDBe 6JZJ · UniProt Q4W6Y8
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.