Research workbench
Crystal structure of prolyl endopeptidase from haliotis discus hannai
Analyse Crystal structure of prolyl endopeptidase from haliotis discus hannai in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6JYM
- Type
- protein
- Length
- 704 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Prolyl endopeptidase
- EC
- 3.4.21.26
- UniProt
- A0A1X9T5X9
- Pockets
- 5 · best druggability 0.73
Structure
x-ray diffraction · 1 distinct chain · 22% helix, 34% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Prolyl endopeptidase (EC 3.4.21.26) | protein | 704 | 22% helix, 34% strand | A0A1X9T5X9 |
Pockets
5 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 643 | 0.73 | 0.80 | 84 | empty |
| 2 | 305 | 0.63 | 0.80 | 39 | empty |
| 3 | 84 | 0.47 | 0.81 | 21 | empty |
| 4 | 59 | 0.31 | 0.75 | 13 | empty |
| 5 | 53 | 0.25 | 0.72 | 13 | empty |
Compared structures
- 6JYM · Crystal structure of Prolyl Endopeptidase from Haliotis discus hannai · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A1X9T5X9
- Elsewhere: RCSB PDB 6JYM · PDBe 6JYM · UniProt A0A1X9T5X9
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