Research workbench
Cryoem structure of S.TYPHIMURIUM R-type straight flagellar filament made of fljb (A461V)
Analyse Cryoem structure of S.TYPHIMURIUM R-type straight flagellar filament made of… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6JY0
- Type
- protein
- Length
- 9,020 residues
- Chains
- 22
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Flagellin
- UniProt
- Q549S3
- Pockets
- 20 · best druggability 0.82
Structure
electron microscopy · 1 distinct chain · 50% helix, 14% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, W | Flagellin | protein | 410 | 50% helix, 14% strand | Q549S3 |
Pockets
20 pockets found on a 1 Å grid, 20 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 927 | 0.82 | 0.84 | 95 | empty |
| 2 | 812 | 0.82 | 0.85 | 94 | empty |
| 3 | 975 | 0.82 | 0.84 | 97 | empty |
| 4 | 920 | 0.82 | 0.84 | 94 | empty |
| 5 | 915 | 0.81 | 0.84 | 98 | empty |
Interfaces
50 interfaces between chains.
- E–J · 2122 Ų buried · 18 hydrogen bonds · protein-protein
- A–F · 2120 Ų buried · 18 hydrogen bonds · protein-protein
- M–R · 2120 Ų buried · 18 hydrogen bonds · protein-protein
- L–Q · 2117 Ų buried · 18 hydrogen bonds · protein-protein
- P–U · 2116 Ų buried · 18 hydrogen bonds · protein-protein
Compared structures
- 6JY0 · CryoEM structure of S.typhimurium R-type straight flagellar filament made of FljB (A461V) · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q549S3
- Elsewhere: RCSB PDB 6JY0 · PDBe 6JY0 · UniProt Q549S3
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