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Crystal structure of arabidopsis thaliana NRP2

Analyse Crystal structure of arabidopsis thaliana NRP2 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6JQV
Type: protein
Length: 326 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: NAP1-related protein 2
UniProt: Q8LC68
Pockets: 4 · best druggability 0.73

Structure

x-ray diffraction · 2 distinct chains · 52% helix, 17% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	NAP1-related protein 2	protein	164	49% helix, 18% strand	Q8LC68
B	NAP1-related protein 2	protein	162	55% helix, 17% strand	Q8LC68

Pockets

4 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	237	0.73	0.88	29	empty
2	382	0.73	0.84	43	empty
3	261	0.53	0.76	36	empty
4	179	0.50	0.77	27	empty

Interfaces

1 interface between chains.

A–B · 1469 Å² buried · 12 hydrogen bonds · protein-protein

Compared structures

6JQV · Crystal structure of Arabidopsis thaliana NRP2 · the same entry in another collection · chain A against A, TM-score 1.00
Q8LC68 · AlphaFold monomer V2.0 prediction for NAP1-related protein 2 (Q8LC68) · a predicted model of the same protein · chain A against A, TM-score 0.94

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8LC68
Elsewhere: RCSB PDB 6JQV · PDBe 6JQV · UniProt Q8LC68

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