Research workbench
CJP38, a beta-1,3-glucanase and allergen of cryptomeria japonica pollen
Analyse CJP38, a beta-1,3-glucanase and allergen of cryptomeria japonica pollen in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6JMS
- Type
- protein
- Length
- 320 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Pollen allergen CJP38
- EC
- 3.2.1.39
- UniProt
- Q588B8
- Pockets
- 3 · best druggability 0.53
Structure
x-ray diffraction · 1 distinct chain · 41% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Pollen allergen CJP38 (EC 3.2.1.39) | protein | 320 | 41% helix, 19% strand | Q588B8 |
Ligands and binding sites
- EDO · 1,2-ethanediol · additive · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 306 | 0.53 | 0.74 | 33 | EDO |
| 2 | 79 | 0.43 | 0.80 | 22 | empty |
| 3 | 78 | 0.38 | 0.77 | 17 | empty |
Compared structures
- 6JMS · CJP38, a beta-1,3-glucanase and allergen of Cryptomeria japonica pollen · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q588B8
- Elsewhere: RCSB PDB 6JMS · PDBe 6JMS · UniProt Q588B8
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