Research workbench
Crystal structure of ostrinia furnacalis group IV chitinase in complex with allosamidin
Analyse Crystal structure of ostrinia furnacalis group IV chitinase in complex with… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6JMB
- Type
- protein
- Length
- 374 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ofchtiv-allosamidin
- Ligands
- AMI, NAA
- Pockets
- 1 · best druggability 0.65
Structure
x-ray diffraction · 1 distinct chain · 38% helix, 22% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ofchtiv-allosamidin | protein | 374 | 38% helix, 22% strand | — |
Ligands and binding sites
- AMI · Allosamizoline · ligand · chains A
- NAA · 2-acetamido-2-deoxy-beta-D-allopyranose · sugar · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 394 | 0.65 | 0.79 | 46 | NAA, AMI |
Modifications
Observed in the structure: 2 disulfide (disulfide).
Compared structures
- 6JMB · Crystal structure of Ostrinia furnacalis Group IV chitinase in complex with allosamidin · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6JMB · PDBe 6JMB
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