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Crystal structure of streptococcus pneumoniae SP_0782 (residues 7-79) in complex with single-stranded DNA DT6
Analyse Crystal structure of streptococcus pneumoniae SP_0782 (residues 7-79) in… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6JIP
- Type
- protein + DNA
- Length
- 69 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- SP_0782; DNA (5'-D(*TP*TP*TP*TP*T)-3')
- UniProt
- Q8DQG2
Structure
x-ray diffraction · 2 distinct chains · 16% helix, 52% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | SP_0782 | protein | 67 | 16% helix, 52% strand | Q8DQG2 |
| B | DNA (5'-D(*TP*TP*TP*TP*T)-3') | dna | 2 | — | — |
Ligands and binding sites
- 1PE · Pentaethylene glycol · additive · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 266 Ų buried · 3 hydrogen bonds · protein-nucleic
Compared structures
- 6JIP · Crystal structure of Streptococcus pneumoniae SP_0782 (residues 7-79) in complex with… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8DQG2
- Elsewhere: RCSB PDB 6JIP · PDBe 6JIP · UniProt Q8DQG2
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