Research workbench
Crystal structure of bacillus subtilis rsbs
Analyse Crystal structure of bacillus subtilis rsbs in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6JHK
- Type
- protein
- Length
- 576 residues
- Chains
- 5
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Rsbs negative regulator of sigma-B
- UniProt
- A0A063XHI7
- Pockets
- 6 · best druggability 0.59
Structure
x-ray diffraction · 2 distinct chains · 48% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Rsbs negative regulator of sigma-B | protein | 116 | 48% helix, 17% strand | A0A063XHI7 |
| B, C, D, E | Rsbs negative regulator of sigma-B | protein | 115 | 48% helix, 18% strand | A0A063XHI7 |
Pockets
6 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 308 | 0.59 | 0.77 | 42 | empty |
| 2 | 305 | 0.57 | 0.77 | 43 | empty |
| 3 | 203 | 0.52 | 0.77 | 37 | empty |
| 4 | 198 | 0.50 | 0.76 | 25 | empty |
| 5 | 75 | 0.42 | 0.80 | 22 | empty |
Interfaces
5 interfaces between chains.
- A–E · 692 Ų buried · 4 hydrogen bonds · protein-protein
- D–E · 665 Ų buried · 2 hydrogen bonds · protein-protein
- B–C · 660 Ų buried · 6 hydrogen bonds · protein-protein
- C–D · 653 Ų buried · 7 hydrogen bonds · protein-protein
- A–B · 644 Ų buried · 3 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 5 modified (phosphorylation).
Compared structures
- 6JHK · Crystal Structure of Bacillus subtilis RsbS · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A063XHI7
- Elsewhere: RCSB PDB 6JHK · PDBe 6JHK · UniProt A0A063XHI7
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