Crystal structure of barley exohydrolasei W286F in complex with 4'- nitrophenyl thiolaminaribioside

Structure

x-ray diffraction · 1 distinct chain · 38% helix, 12% strand (DSSP).

Ligands and binding sites

• 6BV · (2~{R},3~{S},4~{S},5~{R},6~{R})-6-(hydroxymethyl)-4-[(2~{S},3~{R},4~{S},5~{S},6~{R})-6-(hydroxymethyl)-3, 4,5-tris(oxidanyl)oxan-2-yl]sulfanyl-oxane-2,3,5-triol · ligand · chains A
• NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 3 copies · chains A
• SO4 · Sulfate ion · ion · 4 copies · chains A
• 1PE · Pentaethylene glycol · additive · 6 copies · chains A
• GOL · Glycerol · additive · 3 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Modifications

Observed in the structure: 3 glycan, 2 disulfide (N-glycosylation, disulfide).

Compared structures

• 6JGA · Crystal structure of barley exohydrolaseI W286F in complex with 4'-nitrophenyl… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

• Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
• Every structure of UniProt A0A287SCR5
• Elsewhere: RCSB PDB 6JGA · PDBe 6JGA · UniProt A0A287SCR5