Research workbench
An ankyrin-repeat protein complex guides cargos from inner envelope to thylakoid tat pathway
Analyse An ankyrin-repeat protein complex guides cargos from inner envelope to… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6JD6
- Type
- protein
- Length
- 391 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ankyrin repeat domain-containing protein EMB506, chloroplastic; Ankyrin repeat…
- UniProt
- Q9SQK3, Q05753
- Ligands
- SO4
- Pockets
- 2 · best druggability 0.74
Structure
x-ray diffraction · 2 distinct chains · 50% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ankyrin repeat domain-containing protein EMB506, chloroplastic | protein | 199 | 50% helix, 0% strand | Q9SQK3 |
| B | Ankyrin repeat domain-containing protein, chloroplastic | protein | 192 | 49% helix, 0% strand | Q05753 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 10 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 144 | 0.74 | 0.92 | 29 | SO4 |
| 2 | 50 | 0.47 | 0.86 | 17 | empty |
Interfaces
1 interface between chains.
- A–B · 3497 Ų buried · 43 hydrogen bonds · protein-protein
Compared structures
- 6JD6 · An ankyrin-repeat protein complex guides cargos from inner envelope to thylakoid Tat… · the same entry in another collection · chain A against A, TM-score 1.00
- Q9SQK3 · AlphaFold monomer V2.0 prediction for ankyrin repeat domain- containing protein EMB506… · a predicted model of the same protein · chain A against A, TM-score 0.99
- Q05753 · AlphaFold monomer V2.0 prediction for ankyrin repeat domain- containing protein… · a predicted model of the same protein · chain B against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9SQK3
- Every structure of UniProt Q05753
- Elsewhere: RCSB PDB 6JD6 · PDBe 6JD6 · UniProt Q9SQK3 · UniProt Q05753
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