Research workbench
AAV1 in neutral condition at 3.07 ang
Analyse AAV1 in neutral condition at 3.07 ang in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6JCR
- Type
- protein
- Length
- 518 residues
- Chains
- 1
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Capsid protein
- UniProt
- Q9WBP8
- Pockets
- 7 · best druggability 0.61
Structure
electron microscopy · 1 distinct chain · 4% helix, 29% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Capsid protein | protein | 518 | 4% helix, 29% strand | Q9WBP8 |
Pockets
7 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 434 | 0.61 | 0.76 | 57 | empty |
| 2 | 145 | 0.50 | 0.79 | 22 | empty |
| 3 | 125 | 0.43 | 0.77 | 28 | empty |
| 4 | 106 | 0.39 | 0.75 | 24 | empty |
| 5 | 126 | 0.38 | 0.74 | 19 | empty |
Compared structures
- 6JCR · AAV1 in neutral condition at 3.07 Ang · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9WBP8
- Elsewhere: RCSB PDB 6JCR · PDBe 6JCR · UniProt Q9WBP8
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