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The cryo-EM structure of nucleoprotein-RNA complex of newcastle disease virus
Analyse The cryo-EM structure of nucleoprotein-RNA complex of newcastle disease virus in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6JC3
- Type
- protein + RNA
- Length
- 397 residues
- Chains
- 2
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Nucleocapsid; Polyu
- UniProt
- D6R3F6
- Pockets
- 6 · best druggability 0.65
Structure
electron microscopy · 2 distinct chains · 57% helix, 1% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Nucleocapsid | protein | 391 | 57% helix, 1% strand | D6R3F6 |
| N | Polyu | rna | 6 | — | — |
Pockets
6 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 240 | 0.65 | 0.83 | 43 | empty |
| 2 | 216 | 0.61 | 0.81 | 45 | empty |
| 3 | 166 | 0.56 | 0.81 | 29 | empty |
| 4 | 116 | 0.51 | 0.81 | 23 | empty |
| 5 | 94 | 0.35 | 0.74 | 20 | empty |
Interfaces
1 interface between chains.
- A–N · 714 Ų buried · 8 hydrogen bonds · protein-nucleic
Compared structures
- 6JC3 · The Cryo-EM structure of nucleoprotein-RNA complex of Newcastle disease virus · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt D6R3F6
- Elsewhere: RCSB PDB 6JC3 · PDBe 6JC3 · UniProt D6R3F6
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