Research workbench

Crystal structure of ABC transporter alpha-glycoside-binding mutant protein R356A in ligand free form

Analyse Crystal structure of ABC transporter alpha-glycoside-binding mutant protein… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6JAL
Type: protein
Length: 416 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: ABC transporter, periplasmic substrate-binding protein
UniProt: Q5SLD7
Pockets: 1 · best druggability 0.55

Structure

x-ray diffraction · 1 distinct chain · 48% helix, 16% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	ABC transporter, periplasmic substrate-binding protein	protein	416	48% helix, 16% strand	Q5SLD7

Ligands and binding sites

ACT · Acetate ion · additive · 2 copies · chains A
PEG · Di(hydroxyethyl)ether · additive · 2 copies · chains A
EDO · 1,2-ethanediol · additive · 2 copies · chains A
GOL · Glycerol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	336	0.55	0.75	47	PEG

Compared structures

6JAL · Crystal structure of ABC transporter alpha-glycoside-binding mutant protein R356A in… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q5SLD7
Elsewhere: RCSB PDB 6JAL · PDBe 6JAL · UniProt Q5SLD7

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.