Research workbench
NMEBH+ACRIIC2
Analyse NMEBH+ACRIIC2 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6J9M
- Type
- protein
- Length
- 510 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- CRISPR-associated endonuclease CAS9; ACRIIC2
- EC
- 3.1.-.-
- UniProt
- A0A1V0G6B2, A0A3E2QCQ3
- Pockets
- 6 · best druggability 0.69
Structure
x-ray diffraction · 6 distinct chains · 30% helix, 27% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | CRISPR-associated endonuclease CAS9 (EC 3.1.-.-) | protein | 30 | 73% helix, 0% strand | A0A1V0G6B2 |
| B | ACRIIC2 | protein | 113 | 24% helix, 31% strand | A0A3E2QCQ3 |
| C | ACRIIC2 | protein | 113 | 26% helix, 31% strand | A0A3E2QCQ3 |
| D | ACRIIC2 | protein | 110 | 25% helix, 32% strand | A0A3E2QCQ3 |
| E | ACRIIC2 | protein | 116 | 25% helix, 30% strand | A0A3E2QCQ3 |
| F | CRISPR-associated endonuclease CAS9 (EC 3.1.-.-) | protein | 28 | 71% helix, 0% strand | A0A1V0G6B2 |
Pockets
6 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 491 | 0.69 | 0.79 | 51 | empty |
| 2 | 199 | 0.49 | 0.75 | 35 | empty |
| 3 | 174 | 0.42 | 0.73 | 23 | empty |
| 4 | 76 | 0.34 | 0.75 | 17 | empty |
| 5 | 55 | 0.28 | 0.75 | 15 | empty |
Interfaces
9 interfaces between chains.
- B–E · 1373 Ų buried · 21 hydrogen bonds · protein-protein
- C–D · 1246 Ų buried · 19 hydrogen bonds · protein-protein
- B–F · 771 Ų buried · 18 hydrogen bonds · protein-protein
- A–D · 768 Ų buried · 21 hydrogen bonds · protein-protein
- E–F · 598 Ų buried · 11 hydrogen bonds · protein-protein
Compared structures
- 6J9M · NmeBH+AcrIIC2 · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A1V0G6B2
- Every structure of UniProt A0A3E2QCQ3
- Elsewhere: RCSB PDB 6J9M · PDBe 6J9M · UniProt A0A1V0G6B2 · UniProt A0A3E2QCQ3
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