Research workbench
Cryo-EM structure of xanthomonos oryzae transcription elongation complex with nusa and the bacteriophage protein P7
Analyse Cryo-EM structure of xanthomonos oryzae transcription elongation complex with… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6J9E
- Type
- protein + DNA + RNA
- Length
- 3,266 residues
- Chains
- 10
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- B2SQT4, B2SQQ1, B2SQQ2, A0A0U4VN94, Q8LTJ5
- Ligands
- ZN, MG
Structure
electron microscopy · 10 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 211 | — | B2SQT4 |
| B | — | protein | 208 | — | B2SQT4 |
| C | — | protein | 1288 | — | B2SQQ1 |
| D | — | protein | 1200 | — | B2SQQ2 |
| E | — | protein | 65 | — | A0A0U4VN94 |
| G | — | dna | 29 | — | — |
| H | — | dna | 22 | — | — |
| I | — | rna | 12 | — | — |
| J | — | protein | 66 | — | Q8LTJ5 |
| F | — | protein | 165 | — | — |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6J9E · Cryo-EM structure of Xanthomonos oryzae transcription elongation complex with NusA and… · the same entry in another collection · chain F against F, TM-score 1.00
- B2SQQ1 · AlphaFold monomer V2.0 prediction for DNA-directed RNA polymerase subunit beta (B2SQQ1) · a predicted model of the same protein · chain C against A, TM-score 0.97
- B2SQQ2 · AlphaFold monomer V2.0 prediction for DNA-directed RNA polymerase subunit beta' (B2SQQ2) · a predicted model of the same protein · chain D against A, TM-score 0.95
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B2SQT4
- Every structure of UniProt B2SQQ1
- Every structure of UniProt B2SQQ2
- Every structure of UniProt A0A0U4VN94
- Every structure of UniProt Q8LTJ5
- Elsewhere: RCSB PDB 6J9E · PDBe 6J9E · UniProt B2SQT4 · UniProt B2SQQ1 · UniProt B2SQQ2 · UniProt A0A0U4VN94 · UniProt Q8LTJ5
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