Research workbench
Structure of HRPV6 VP5 fitted in the cryoem density of the spike
Analyse Structure of HRPV6 VP5 fitted in the cryoem density of the spike in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6J7V
- Type
- protein
- Length
- 490 residues
- Chains
- 1
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- VP5
- UniProt
- H9ABP6
- Pockets
- 3 · best druggability 0.39
Structure
electron microscopy · 1 distinct chain · 35% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | VP5 | protein | 490 | 35% helix, 23% strand | H9ABP6 |
Pockets
3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 82 | 0.39 | 0.77 | 17 | empty |
| 2 | 74 | 0.38 | 0.78 | 21 | empty |
| 3 | 68 | 0.33 | 0.76 | 17 | empty |
Compared structures
- 6J7V · Structure of HRPV6 VP5 fitted in the cryoEM density of the spike · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt H9ABP6
- Elsewhere: RCSB PDB 6J7V · PDBe 6J7V · UniProt H9ABP6
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