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Thermal treated soybean seed H-2 ferritin

Analyse Thermal treated soybean seed H-2 ferritin in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6J4M
Type: protein
Length: 332 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Ferritin
EC: 1.16.3.1
UniProt: I1J7H3
Ligands: MG
Pockets: 6 · best druggability 0.73

Structure

x-ray diffraction · 1 distinct chain · 77% helix, 1% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
H, A	Ferritin (EC 1.16.3.1)	protein	166	77% helix, 1% strand	I1J7H3

Ligands and binding sites

MG · Magnesium ion · metal · 7 copies · chains H, A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

6 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	55	0.73	0.99	14	empty
2	110	0.41	0.76	18	MG
3	79	0.38	0.77	16	empty
4	91	0.37	0.76	13	MG
5	79	0.37	0.76	16	empty

Interfaces

1 interface between chains.

H–A · 1591 Å² buried · 38 hydrogen bonds · protein-protein

Compared structures

6J4M · Thermal treated soybean seed H-2 ferritin · the same entry in another collection · chain H against H, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt I1J7H3
Elsewhere: RCSB PDB 6J4M · PDBe 6J4M · UniProt I1J7H3

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