Research workbench
ATPASE
Analyse ATPASE in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6J19
- Type
- protein
- Length
- 275 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Esx-1 secretion system protein ECCCB1; Esat-6-like protein esxb
- UniProt
- P9WNB1, P9WNK5
- Ligands
- ATP, MG
- Pockets
- 2 · best druggability 0.43
Structure
x-ray diffraction · 2 distinct chains · 30% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Esx-1 secretion system protein ECCCB1 | protein | 261 | 31% helix, 22% strand | P9WNB1 |
| B | Esat-6-like protein esxb | protein | 14 | 21% helix, 0% strand | P9WNK5 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 127 | 0.43 | 0.76 | 31 | ATP, MG |
| 2 | 53 | 0.26 | 0.74 | 15 | empty |
Interfaces
1 interface between chains.
- A–B · 440 Ų buried · 2 hydrogen bonds · protein-protein
Compared structures
- 6J19 · ATPase · the same entry in another collection · chain A against A, TM-score 1.00
- P9WNB1 · AlphaFold monomer V2.0 prediction for esx-1 secretion system protein ECCCB1 (P9WNB1) · a predicted model of the same protein · chain A against A, TM-score 0.98
- P9WNK5 · AlphaFold monomer V2.0 prediction for esat-6-like protein esxb (P9WNK5) · a predicted model of the same protein · chain B against A, TM-score 0.36
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P9WNB1
- Every structure of UniProt P9WNK5
- Elsewhere: RCSB PDB 6J19 · PDBe 6J19 · UniProt P9WNB1 · UniProt P9WNK5
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