Research workbench

ATPASE

Analyse ATPASE in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6J17
Type: protein
Length: 254 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Esx-3 secretion system protein ECCC3
UniProt: P9WNA9
Ligands: ATP, MG
Pockets: 3 · best druggability 0.43

Structure

x-ray diffraction · 1 distinct chain · 22% helix, 24% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Esx-3 secretion system protein ECCC3	protein	254	22% helix, 24% strand	P9WNA9

Ligands and binding sites

ATP · Adenosine-5'-triphosphate · ligand · chains A
MG · Magnesium ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	104	0.43	0.78	21	ATP, MG
2	124	0.42	0.76	18	empty
3	69	0.38	0.78	18	empty

Compared structures

6J17 · ATPase · the same entry in another collection · chain A against A, TM-score 1.00
P9WNA9 · AlphaFold monomer V2.0 prediction for esx-3 secretion system protein ECCC3 (P9WNA9) · a predicted model of the same protein · chain A against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P9WNA9
Elsewhere: RCSB PDB 6J17 · PDBe 6J17 · UniProt P9WNA9

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