Research workbench
Tgev NSP1 mutant - 91-95SG
Analyse Tgev NSP1 mutant - 91-95SG in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6IVD
- Type
- protein
- Length
- 211 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- NSP1 mutant protein
- UniProt
- A0A140EDJ9
- Pockets
- 2 · best druggability 0.42
Structure
x-ray diffraction · 2 distinct chains · 19% helix, 43% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | NSP1 mutant protein | protein | 107 | 19% helix, 42% strand | A0A140EDJ9 |
| B | NSP1 mutant protein | protein | 104 | 19% helix, 44% strand | A0A140EDJ9 |
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 122 | 0.42 | 0.76 | 20 | empty |
| 2 | 54 | 0.39 | 0.81 | 16 | empty |
Interfaces
1 interface between chains.
- A–B · 555 Ų buried · 3 hydrogen bonds · protein-protein
Compared structures
- 6IVD · TGEV nsp1 mutant - 91-95sg · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A140EDJ9
- Elsewhere: RCSB PDB 6IVD · PDBe 6IVD · UniProt A0A140EDJ9
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