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Crystal structure of porphyromonas gingivalis phosphotransacetylase
Analyse Crystal structure of porphyromonas gingivalis phosphotransacetylase in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6IOW
- Type
- protein
- Length
- 679 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Phosphotransacetylase
- UniProt
- B2RK03
- Pockets
- 5 · best druggability 0.69
Structure
x-ray diffraction · 2 distinct chains · 47% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Phosphotransacetylase | protein | 339 | 47% helix, 17% strand | B2RK03 |
| B | Phosphotransacetylase | protein | 340 | 47% helix, 17% strand | B2RK03 |
Pockets
5 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 546 | 0.69 | 0.78 | 47 | empty |
| 2 | 415 | 0.60 | 0.75 | 49 | empty |
| 3 | 245 | 0.56 | 0.78 | 27 | empty |
| 4 | 156 | 0.55 | 0.81 | 19 | empty |
| 5 | 77 | 0.36 | 0.77 | 15 | empty |
Interfaces
1 interface between chains.
- A–B · 1786 Ų buried · 6 hydrogen bonds · protein-protein
Compared structures
- 6IOW · Crystal structure of Porphyromonas gingivalis phosphotransacetylase · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B2RK03
- Elsewhere: RCSB PDB 6IOW · PDBe 6IOW · UniProt B2RK03
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