Research workbench
Structural basis of aimp signaling molecule recognition by aimr in spbeta group of bacteriophages
Analyse Structural basis of aimp signaling molecule recognition by aimr in spbeta group… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6IM4
- Type
- protein
- Length
- 792 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Aimr transcriptional regulator; Gly-met-pro-arg-gly-ala
- UniProt
- O64094
- Pockets
- 9 · best druggability 0.67
Structure
x-ray diffraction · 2 distinct chains · 70% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Aimr transcriptional regulator | protein | 390 | 72% helix, 0% strand | O64094 |
| C, D | Gly-met-pro-arg-gly-ala | protein | 6 | 0% helix, 0% strand | — |
Pockets
9 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 558 | 0.67 | 0.77 | 55 | empty |
| 2 | 426 | 0.66 | 0.79 | 41 | empty |
| 3 | 407 | 0.64 | 0.78 | 40 | empty |
| 4 | 153 | 0.43 | 0.75 | 24 | empty |
| 5 | 89 | 0.38 | 0.76 | 14 | empty |
Interfaces
3 interfaces between chains.
- A–D · 571 Ų buried · 12 hydrogen bonds · protein-protein
- B–C · 567 Ų buried · 11 hydrogen bonds · protein-protein
- A–B · 245 Ų buried · 3 hydrogen bonds · protein-protein
Compared structures
- 6IM4 · Structural basis of AimP signaling molecule recognition by AimR in Spbeta group of… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O64094
- Elsewhere: RCSB PDB 6IM4 · PDBe 6IM4 · UniProt O64094
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