Research workbench
Crystal structure of a protein from actinoplanes
Analyse Crystal structure of a protein from actinoplanes in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6IJ1
- Type
- protein
- Length
- 334 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Prenylcyclase
- UniProt
- A0A1B1ESM0
- Pockets
- 4 · best druggability 0.79
Structure
x-ray diffraction · 1 distinct chain · 49% helix, 5% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Prenylcyclase | protein | 334 | 49% helix, 5% strand | A0A1B1ESM0 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 249 | 0.79 | 0.91 | 29 | empty |
| 2 | 102 | 0.51 | 0.82 | 27 | IMD |
| 3 | 75 | 0.33 | 0.75 | 24 | empty |
| 4 | 63 | 0.31 | 0.75 | 16 | IMD |
Compared structures
- 6IJ1 · Crystal structure of a protein from Actinoplanes · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A1B1ESM0
- Elsewhere: RCSB PDB 6IJ1 · PDBe 6IJ1 · UniProt A0A1B1ESM0
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