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Crystal structure to 1.74 ångströms resolution of metmyoglobin from yellowfin tuna (thunnus albacares): an example of a myoglobin lacking the D helix

Analyse Crystal structure to 1.74 ångströms resolution of metmyoglobin from yellowfin… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1MYT
Type: protein
Length: 146 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Myoglobin
UniProt: P02205
Ligands: HEM
Pockets: 1 · best druggability 0.73

Structure

x-ray diffraction · 1 distinct chain · 75% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Myoglobin	protein	146	75% helix, 0% strand	P02205

Ligands and binding sites

HEM · Protoporphyrin IX containing Fe · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	278	0.73	0.86	34	HEM

Compared structures

1MYT · Crystal structure to 1.74 ångströms resolution of metmyoglobin from yellowfin tuna… · the same entry in another collection · chain A against A, TM-score 1.00
P02205 · AlphaFold monomer V2.0 prediction for myoglobin (P02205) · a predicted model of the same protein · chain A against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P02205
Elsewhere: RCSB PDB 1MYT · PDBe 1MYT · UniProt P02205

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