Research workbench
Adeno-associated virus 2 at 2.8 ang
Analyse Adeno-associated virus 2 at 2.8 ang in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6IH9
- Type
- protein
- Length
- 517 residues
- Chains
- 1
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Capsid protein VP1
- UniProt
- P03135
- Pockets
- 6 · best druggability 0.65
Structure
electron microscopy · 1 distinct chain · 4% helix, 35% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Capsid protein VP1 | protein | 517 | 4% helix, 35% strand | P03135 |
Pockets
6 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 546 | 0.65 | 0.76 | 63 | empty |
| 2 | 273 | 0.57 | 0.77 | 38 | empty |
| 3 | 113 | 0.41 | 0.76 | 23 | empty |
| 4 | 104 | 0.39 | 0.75 | 18 | empty |
| 5 | 125 | 0.38 | 0.73 | 21 | empty |
Compared structures
- 6IH9 · Adeno-Associated Virus 2 at 2.8 ang · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P03135
- Elsewhere: RCSB PDB 6IH9 · PDBe 6IH9 · UniProt P03135
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