Research workbench
Onion lachrymatory factor synthase (lfs) containing (E)-2-propen 1-ol (crotyl alcohol)
Analyse Onion lachrymatory factor synthase (lfs) containing (E)-2-propen 1-ol (crotyl… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6IES
- Type
- protein
- Length
- 302 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Lachrymatory-factor synthase
- UniProt
- P59082
- Ligands
- 9A7
- Pockets
- 1 · best druggability 0.31
Structure
x-ray diffraction · 1 distinct chain · 27% helix, 45% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Lachrymatory-factor synthase | protein | 151 | 27% helix, 45% strand | P59082 |
Ligands and binding sites
- 9A7 · (2E)-but-2-en-1-ol · ligand · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 86 | 0.31 | 0.73 | 25 | empty |
Interfaces
1 interface between chains.
- A–B · 446 Ų buried · 6 hydrogen bonds · protein-protein
Compared structures
- 6IES · Onion lachrymatory factor synthase (LFS) containing (E)-2-propen 1-ol (crotyl alcohol) · the same entry in another collection · chain A against A, TM-score 1.00
- P59082 · AlphaFold monomer V2.0 prediction for lachrymatory-factor synthase (P59082) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P59082
- Elsewhere: RCSB PDB 6IES · PDBe 6IES · UniProt P59082
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