Research workbench
Apo crystal structure of archaeal methanocaldococcus infernus ELP3 (DEL1-19)
Analyse Apo crystal structure of archaeal methanocaldococcus infernus ELP3 (DEL1-19) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6IA8
- Type
- protein
- Length
- 426 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Histone acetyltransferase, ELP3 family
- EC
- 2.3.1.48
- UniProt
- D5VRB9
- Ligands
- SO4
- Pockets
- 2 · best druggability 0.81
Structure
x-ray diffraction · 1 distinct chain · 38% helix, 24% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Histone acetyltransferase, ELP3 family (EC 2.3.1.48) | protein | 426 | 38% helix, 24% strand | D5VRB9 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 7 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 893 | 0.81 | 0.83 | 84 | SO4 |
| 2 | 137 | 0.56 | 0.82 | 26 | empty |
Modifications
Observed in the structure: 1 disulfide (disulfide).
Compared structures
- 6IA8 · Apo crystal structure of archaeal Methanocaldococcus infernus Elp3 (del1-19) · the same entry in another collection · chain A against A, TM-score 1.00
- D5VRB9 · AlphaFold monomer V2.0 prediction for tRNA URIDINE(34) acetyltransferase (D5VRB9) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt D5VRB9
- Elsewhere: RCSB PDB 6IA8 · PDBe 6IA8 · UniProt D5VRB9
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