Research workbench
Crystal structure of antirestriction ardc protein from R388 plasmid. metal-free structure.
Analyse Crystal structure of antirestriction ardc protein from R388 plasmid. metal-free… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6I89
- Type
- protein
- Length
- 274 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ardc protein
- UniProt
- Q6I6B2
- Pockets
- 3 · best druggability 0.44
Structure
x-ray diffraction · 1 distinct chain · 45% helix, 16% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ardc protein | protein | 274 | 45% helix, 16% strand | Q6I6B2 |
Ligands and binding sites
- MPD · (4S)-2-methyl-2,4-pentanediol · additive · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 162 | 0.44 | 0.75 | 24 | empty |
| 2 | 105 | 0.41 | 0.77 | 19 | empty |
| 3 | 51 | 0.36 | 0.80 | 16 | empty |
Compared structures
- 6I89 · Crystal structure of Antirestriction ArdC protein from R388 plasmid. Metal-free structure. · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q6I6B2
- Elsewhere: RCSB PDB 6I89 · PDBe 6I89 · UniProt Q6I6B2
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