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Crocagin biosynthetic gene J

Analyse Crocagin biosynthetic gene J in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6I86
Type: protein
Length: 466 residues
Chains: 3
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Uncharacterized protein
UniProt: A0A0K1EC30
Pockets: 6 · best druggability 0.70

Structure

x-ray diffraction · 2 distinct chains · 15% helix, 43% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Uncharacterized protein	protein	156	14% helix, 44% strand	A0A0K1EC30
C	Uncharacterized protein	protein	154	15% helix, 42% strand	A0A0K1EC30

Ligands and binding sites

GOL · Glycerol · additive · 3 copies · chains A, B, C

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

6 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	344	0.70	0.82	32	empty
2	170	0.58	0.82	27	empty
3	132	0.51	0.80	20	empty
4	51	0.33	0.78	11	empty
5	54	0.31	0.77	16	empty

Interfaces

3 interfaces between chains.

B–C · 670 Å² buried · 6 hydrogen bonds · protein-protein
A–C · 656 Å² buried · 9 hydrogen bonds · protein-protein
A–B · 323 Å² buried · 6 hydrogen bonds · protein-protein

Compared structures

6I86 · Crocagin biosynthetic gene J · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A0K1EC30
Elsewhere: RCSB PDB 6I86 · PDBe 6I86 · UniProt A0A0K1EC30

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