Research workbench
NMR solution structure of BENZ[A]ANTHRACENE-dg in RAS codon 12,2; ggcagxtggtg
Analyse NMR solution structure of BENZ[A]ANTHRACENE-dg in RAS codon 12,2; ggcagxtggtg in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1MXJ
- Type
- DNA
- Length
- 22 nucleotides
- Chains
- 2
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 5'-D(*GP*GP*CP*AP*GP*GP*TP*GP*GP*TP*G)-3'; 5'-D(*CP*AP*CP*CP*AP*CP*CP*TP*GP*CP*C)-3'
- Ligands
- BZR
Structure
solution nmr · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 5'-D(*GP*GP*CP*AP*GP*GP*TP*GP*GP*TP*G)-3' | dna | 11 | — | — |
| B | 5'-D(*CP*AP*CP*CP*AP*CP*CP*TP*GP*CP*C)-3' | dna | 11 | — | — |
Ligands and binding sites
- BZR · 1S,2R,3S,4R-tetrahydro-benzo[a]anthracene-2,3,4-triol · ligand · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 520 Ų buried · 65 hydrogen bonds · nucleic-nucleic
Modifications
Observed in the structure: 1 covalent (covalent ligand).
Compared structures
- 1MXJ · NMR solution structure of benz[a]anthracene-dG in ras codon 12,2; GGCAGXTGGTG · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 1MXJ · PDBe 1MXJ
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