Research workbench
Outward facing structure of apo cst
Analyse Outward facing structure of apo cst in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6I1Z
- Type
- protein
- Length
- 574 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Cmp-sialic acid transporter 1
- UniProt
- B4FZ94
- Pockets
- 11 · best druggability 0.75
Structure
x-ray diffraction · 2 distinct chains · 77% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Cmp-sialic acid transporter 1 | protein | 283 | 77% helix, 0% strand | B4FZ94 |
| B | Cmp-sialic acid transporter 1 | protein | 291 | 77% helix, 0% strand | B4FZ94 |
Pockets
11 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 959 | 0.75 | 0.78 | 60 | empty |
| 2 | 989 | 0.75 | 0.77 | 65 | empty |
| 3 | 295 | 0.59 | 0.77 | 36 | empty |
| 4 | 127 | 0.46 | 0.77 | 16 | empty |
| 5 | 118 | 0.40 | 0.75 | 18 | empty |
Interfaces
1 interface between chains.
- A–B · 1318 Ų buried · 6 hydrogen bonds · protein-protein
Compared structures
- 6I1Z · Outward facing structure of apo CST · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B4FZ94
- Elsewhere: RCSB PDB 6I1Z · PDBe 6I1Z · UniProt B4FZ94
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