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Apo structure of tp domain from escherichia COLI penicillin-binding protein 3

Analyse Apo structure of tp domain from escherichia COLI penicillin-binding protein 3 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6HZQ
Type: protein
Length: 301 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Peptidoglycan D,D-transpeptidase ftsi
EC: 3.4.16.4
UniProt: A0A0V7WLC6
Pockets: 2 · best druggability 0.54

Structure

x-ray diffraction · 1 distinct chain · 36% helix, 21% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Peptidoglycan D,D-transpeptidase ftsi (EC 3.4.16.4)	protein	301	36% helix, 21% strand	A0A0V7WLC6

Pockets

2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	211	0.54	0.78	31	empty
2	88	0.51	0.83	22	empty

Compared structures

6HZQ · Apo structure of TP domain from Escherichia coli Penicillin-Binding Protein 3 · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A0V7WLC6
Elsewhere: RCSB PDB 6HZQ · PDBe 6HZQ · UniProt A0A0V7WLC6

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